INFORMATION ABOUT PROJECT,
SUPPORTED BY RUSSIAN SCIENCE FOUNDATION

The information is prepared on the basis of data from the information-analytical system RSF, informative part is represented in the author's edition. All rights belong to the authors, the use or reprinting of materials is permitted only with the prior consent of the authors.

 

COMMON PART


Project Number20-74-20012

Project titleA comprehensive study of multifunctional supramolecular systems that controllably affect eukaryotic cells for the development of effective theranostic agents.

Project LeadShipunova Victoria

AffiliationShemyakin - Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences,

Implementation period 07.2020 - 06.2022 

Research area 04 - BIOLOGY AND LIFE SCIENCES, 04-209 - Biotechnology (including biological nanotechnology)

KeywordsNanoparticle modification, bioconjugation, HER2/neu-targeted recombinant proteins, magnetotactic bacteria, biomineralisation, biosensorics, magnetic cytometry, nanoparticle circulation, nanoparticle biodistribution.


 

PROJECT CONTENT


Annotation
This project is a logical continuation of a comprehensive interdisciplinary study that began within the framework of the RSF project No. 17-74-20146 (hereinafter referred to as the Project 2017), aimed at the development of supramolecular structures based on nanoparticles and multifunctional molecules, as well as methods for their effective use in vivo in order to create effective tools for high-precision diagnostics and effective treatment of cancer. As a result of the successful implementation of the Project, over the previous three years, the declared indicators were exceeded, in particular, 12 publications in the Web of Science were published and accepted in print out of the 8 publications, including 5 papers in Q1 quartile journals (including Advanced Functional Materials and Nature Biomedical Engineering), the total impact factor of all published articles was 51.48, as well as a number of abstracts from Russian and international conferences were published. The results obtained during the implementation of the Project 2017 are an essential step towards the creation of effective methods of therapy and diagnosis of cancer that based on nanostructures of different nature. So, in particular, a number of unique methods for nanostructures modification with targeting molecules have been created, which allow targeted delivery of compounds only to target cells with a specific molecular profile, for example, cancer cells. We also synthesized biocompatible nanostructures capable of selectively visualizing and damaging cancer cells with overexpression of the clinically relevant HER2 tumor marker. Such structures are promising agents for theranostics (therapy and diagnostics) of HER2-positive human cancer. However, there is an extremely serious problem of nanobiotechnology - a considerable number of particles that have demonstrated their effectiveness in vitro turn out to be extremely ineffective in vivo. One of the key challenges that nanoagents in a living organism encounter on the way to a therapeutic goal is their active recognition and absorption by the cells of the mononuclear phagocyte system, mainly macrophages of the liver and spleen. As a result, the efficiency of nanoparticle delivery to the tumor averages 0.7% of the total administered dose of the nanoagent. In this regard, during the implementation of Project 2017 by inhibiting the ability of macrophages to phagocytosis, a number of methods were developed aimed at slowing down the process of removing nanoparticles from the bloodstream by means of the temporary blockade of the system of mononuclear phagocytes, which significantly increased the circulation time of nanoagents in the bloodstream. During the implementation of this Project, it is planned to apply the developed methods for prolongation of the circulation of nanoparticles in the bloodstream for targeted oncotherapy and diagnostics using previously synthesized targeted nanoagents. It is expected that it will be possible to significantly increase the biomedical potential of the synthesized nanoagents. Also, in order to increase the therapeutic index of the developed compounds, it is planned to investigate methods of combined action on the tumor with targeted compounds. In particular, it is planned to use the combined action of previously developed polymer nanoparticles loaded with a chemotherapeutic compound in combination with a targeted immunotoxin. Preliminary in vitro results showed that such a combination could lower the concentration of the active substance by 1000 times to achieve the same cytotoxic effect. This suggests that such combination therapy in vivo will significantly affect the growth dynamics of HER2-positive tumors and stop the spread of metastases in xenograft models in immunodeficient mice. It is also planned to study how the combined effect of immunotoxins of different specificity to different molecular targets (for example, HER2 and EpCAM), affects the dynamics of growth of tumor cells in vitro. It is expected that it will be possible to establish patterns that allow synergy to be achieved when compounds act with a similar mechanism of action, but with different specificity from the point of view of target recognition on the cell surface. The data obtained during the implementation of the Project can significantly increase the effectiveness of cancer therapy. The results obtained can bring therapy and diagnosis of socially significant diseases to a new level.

Expected results
The data obtained during the implementation of the Project can significantly increase the effectiveness of cancer therapy. The results obtained can bring therapy and diagnosis of socially significant diseases to a new level. During the project implementation, the following scientific results are expected to be achieved: 1) Combination therapy methods will be developed using chemotherapeutic nanoformulations in combination with immunotherapeutic drugs, namely, targeted immunotoxins, which will significantly increase the effectiveness of the targeted therapy of HER2-positive tumors and prevent the metastasis of these tumors. 2) Fundamental knowledge will be ibtained on how the combined action of targeted immunotoxins directed toward molecular targets such as HER2 and EpCAM affects cell viability. We expect that with various combinations of expression of HER2 and EpCAM receptors on the cell surface and with various combinations of exposure to HER2 and EpCAM-specific immunotoxins, the information will be obtained that will allow us to develop new approaches to oncotherapy. 3) The developed methods for nanoparticle circulation in the bloodstream prolongation for targeted oncotherapy and oncodiagnostics using previously synthesized targeted nanoagents will be used. It is expected that it will be possible to significantly increase the biomedical potential of the synthesized nanoagents for the treatment and diagnostics of tumors. 4) Nanoagents will be synthesized, which will significantly enhance the diagnostic potential of the developed methods and approaches. In particular, bismuth oxochlorate plates will be obtained, which are a much more promising contrast CT agent compared to barium-based agents that are now used in the clinic (according to the results of a number of our in vivo pilot experiments). 5) Based on the results of the work, at least 8 publications will be published (indexed in Web of Science Сore Сollection or Scopus). Thus, the result of this Project will be the development of the fundamental knowledge for the production of new theranostic nanoagents that effectively affect cells in vivo. Such nanoagents will be multifunctional structures assembled on-demand from existing components with different specificity and selectivity. Despite the fact that the tasks formulated in the Project are quite clearly defined, speaking about their scale, the following points should be noted. Despite the fact that the effectiveness of nanoparticles as a promising tool for the treatment and diagnosis of diseases has been demonstrated in vitro on cell cultures for more than a dozen years, a lot of problems have yet to be solved in vivo to prevent the rapid elimination of nanoparticles from the body and the loss of their functional activity by non-selective accumulation in non-target organs and tissues and so on. In particular, the targeted delivery model chosen for the implementation of the Project - namely, the HER2 receptor, is an already tested target of targeted therapy, for example, by means of monoclonal antibodies Herceptin®, Perjeta®, Kadcyla® in the treatment of breast cancer and annual sales volumes of these drugs are valued at tens of billions of US dollars, which indicates the widespread and social significance of these studies. However, the effectiveness of monoclonal antibodies is not always sufficient for effective monotherapy, and even patients who respond well to such therapy develop resistance to drug exposure over time. In this regard, there is a need to create personalized approaches to treatment and the application of the combined therapy by means of agents of various nature with various functions for more effective treatment. Authors believe that the results of the Project will significantly broaden the capabilities of nanobiotechnologies for solving socially significant biomedical problems. Similar studies have not been conducted previously, and we believe that such an integrated approach to the study of the immunological and molecular genetic characteristics of the tumor will achieve significant success in oncotheranostics, as well as we will publish at least eight articles in leading Russian (with impact factor 0.3-2) and foreign (with impact factor 3-10) scientific journals indexed in Web of Science and Scopus.


 

REPORTS


Annotation of the results obtained in 2021
Diagnostic and therapeutic methods have been developed for the personalized medicine applications at this stage of the Project. All issues were fully addressed, all declared indicators were met. Namely, the combination therapy with targeted immunotoxins DARP_9.29-LoPE and DARP_EC1-LoPE was studied using the panel of 10 eukaryotic cell lines. This study showed that cancer cells characterized by low expression of HER2 and high expression of EpCAM are not optimal targets for the combined exposure to targeted anti-HER2 and anti-EpCAM immunotoxins. At the same time, the impact of a combination of targeted immunotoxins on cancer cells with high expression of HER2 and moderate expression of EpCAM is more likely to have a synergistic effect. In this case, an equimolar ratio of immunotoxins is optimal, leading to the strongest synergy of the action of two proteins. Another area of research was the development of in vivo contrast agents. Bismuth oxochlorate plates have been developed for this purpose. The CT contrast properties of bismuth nanoplates were compared with barium-based CT contrast agents already used in the clinic and it was shown that bismuth nanoplates more effectively contrast different parts of the gastrointestinal tract, thus being promising candidates for in vivo diagnostics. The results of the study were published in peer-reviewed Russian (Acta Naturae) and international journals (Molecules, Pharmaceutics).

 

Publications

1. Shipunova V.O., Belova M.M., Kotelnikova P.A., Shilova O.N., Mirkasymov A.B., Danilova N.V., Komedchikova E.N., Popovtzer R., Deyev S.M., Nikitin M.P. Photothermal Therapy with HER2-Targeted Silver Nanoparticles Leading to Cancer Remission Pharmaceutics, 14(5), 1013 (year - 2022) https://doi.org/10.3390/pharmaceutics14051013

2. Shipunova V.O., Sogomonyan A.S., Zelepukin I.V., Nikitin M.P., Deyev S.M. PLGA Nanoparticles Decorated with Anti-HER2 Affibody for Targeted Delivery and Photoinduced Cell Death Molecules, 26(13), 3955 (year - 2021) https://doi.org/10.3390/molecules26133955

3. Sogomonyan A.S., Shipunova V.O., Soloviev V.D.,Larionov V.I., Kotelnikova P.A., Deyev S.M. 3D Models of Cellular Spheroids As a Universal Tool for Studying the Cytotoxic Properties of Anticancer Compounds In Vitro Acta Naturae, 14(1): 92–100 (year - 2022) https://doi.org/10.32607/actanaturae.11603

4. Kolesnikova O.A., Deyev S.M., Shipunova V.O. Адресные магнитные наночастицы для терапии HER2-положительных опухолей Тезисы 64-й конференции МФТИ, C.1-3 (year - 2021)

5. Kotelnikova P.A., Shipunova V.O., Deyev S.M. Разработка многофункциональных таргетных агентов на основе наночастиц серебра Перспективные направления физико-химической биологии и биотехнологии. Сборник тезисов XXXIV Международной зимней молодёжной научной школы. Москва, 2022, С. 134 (year - 2022)

6. Shipunova V.O., Deyev S.M. Polymer nanocapsules are effective tools for the personified metastatic tumors treatment Тезисы докладов, VI International Symposium on «Physics, Engineering and Technologies for Biomedicine», C.1-3 (year - 2021)

7. Shipunova V.O., Deyev S.M. Nanostructures for oncotheranostics Тезисы докладов, VI International Symposium on «Physics, Engineering and Technologies for Biomedicine», C.1-3 (year - 2021)


Annotation of the results obtained in 2020
This project is a continuation of comprehensive interdisciplinary research that began within the framework of the Russian Science Foundation project No. 17-74-20146, directed toward the development of supramolecular complexes based on nanostructures and multispecific molecules as well as methods for their effective use in vivo in order to create methods for high-precision diagnostics and effective therapy of cancer diseases. As a result of the successful implementation of the Project, two highly-rated publications were published in the reporting period (Shipunova et al., ACS Nano, 2020, IF = 14.558, Q1; Mirkasimov et al., Journal of Controlled release, 2021, IF = 7.727, Q1). The results of the research were presented at 4 conferences. Oral presentations were awarded diplomas for the best reports. The results obtained are an important step towards the creation of effective methods of therapy and diagnostics based on nanostructures of various nature. In particular, a strategy was developed for the combination therapy of HER2-overexpressing tumors by targeting with two compounds one tumor marker, namely HER2. When choosing a cancer therapy regimen, a situation often arises when therapy with one drug is insufficient for effective elimination of the tumor and metastases, and it is necessary to use combined methods to enhance the therapeutic effect. In this case, again, a situation often arises when there is only one target on a cancer cell for targeted delivery of compounds, e.g. the HER2 marker, and there is no possibility to enhance therapy by introducing a drug directed to another target (e.g., EpCAM). We proposed the use of different domains of the same receptor, the HER2 tumor marker, for combination immune/chemotherapy. Namely, it was proposed to use cytotoxic PLGA nanoparticles targeting subdomains III and IV of the HER2 receptor via the affibody ZHER2: 342, in combination with the targeted immunotoxin DARP_9.29-LoPE, targeting the subdomain I of the HER2 receptor. This combined effect (PLGA*ZHER2:342 and DARP_9.29-LoPE) on cancer cells is characterized by strong synergy when acting on cells with HER2overexpression, while this effect is much less pronounced for cells with a normal expression level up to antagonism for cells with a lack of HER2 expression. From the point of view of the application of this strategy in vivo, this approach looks especially attractive, since the greatest cytotoxic effect will be achieved for cells with overexpression of the receptor with minimal effect on normal cells. This strategy made it possible to increase the effectiveness of antitumor therapy of HER2-positive cells in vivo compared to monotherapy, as well as to prevent the appearance of metastases. As part of the continuation of work on the project, it is planned to study in detail the combined effect of targeted therapeutics directed to different tumor markers, namely HER2 and EpCAM. It is planned that it will be possible to obtain fundamental characteristics of the effectiveness of combination therapy with compounds directed to the surface receptors of cancer cells. It is worth noting that the internalization and intracellular signaling of one of these receptors affects the expression and shedding of the other receptor, which has a significant effect on the binding of targeted compounds to the cell. It is expected that it will be possible to establish patterns that allow achieving synergy when exposed to compounds with a similar mechanism of action, but different specificity in terms of target recognition on the cell surface. The data obtained during the implementation of the project will significantly increase the effectiveness of oncotheranostics. The solution of the described goals and objectives can bring the therapy and diagnosis of socially significant diseases to a qualitatively new level.

 

Publications

1. Aziz B. Mirkasymov, Ivan V. Zelepukin, Petr I. Nikitin, Maxim P. Nikitin, Sergey M. Deyev In vivo blockade of mononuclear phagocyte system with solid nanoparticles: Efficiency and affecting factors Journal of Controlled Release, - (year - 2020)

2. Victoria O. Shipunova, Elena N. Komedchikova, Polina A. Kotelnikova, Ivan V. Zelepukin, Alexey A. Schulga, Galina M. Proshkina, Elena I. Shramova, Hilliard L. Kutscher, Georgij B. Telegin, Andrei V. Kabashin, Paras N. Prasad, and Sergey M. Deyev Dual Regioselective Targeting the Same Receptor in Nanoparticle-Mediated Combination Immuno/Chemotherapy for Enhanced Image-Guided Cancer Treatment ACS Nano, 14, 10, 12781–12795 (year - 2020) https://doi.org/10.1021/acsnano.0c03421

3. Belova M.M., Shipunova V.O., Deyev S.M. Серебряные наночастицы для направленной фототермически-индуцируемой гибели HER2-сверхэкспрессирующих раковых клеток XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 193 (year - 2021)

4. Belova M.M., Shipunova V.O., Deyev S.M. Серебряные наночастицы для адресной фототермической терапии раковых заболеваний Труды 63-й Всероссийской научной конференции МФТИ, Стр.128 (year - 2020)

5. Firuleva P.A., Shipunova V.O., Deyev S.M. Полимерные PLGA наночастицы, загруженные плазмонными частицами серебра, и модифицированные адресными молекулами для доставки к HER2 сверхэкспрессирующим раковым клеткам XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр.174 (year - 2021)

6. Kolesnikova O.A., Shipunova V.O., Soloviev V.D., Deyev S.M. Наночастицы магнетита для терапии HER2-положительных опухолей Труды 63-й Всероссийской научной конференции МФТИ, Стр. 111 (year - 2020)

7. Kolesnikova O.A., Shipunova V.O., Soloviev V.D.,Deyev S.M. Получение и характеристика магнитных наночастиц для терапии HER2-положительных опухолей XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 204 (year - 2021)

8. Komedchikova E.N., Shipunova V.O., Deyev S.M. Многофункциональные биосовместимые наночастицы для фототермической терапии Труды 63-й Всероссийской научной конференции МФТИ, Стр. 107-108 (year - 2020)

9. Kotelnikova P.A., Shipunova V.O., Deyev S.M. Конструкции на основе серебряных наночастиц для комбинированного воздействия на раковые клетки XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 146 (year - 2021)

10. Makarov A.D., Shipunova V.O., Proshkina G.M., Deyev S.M. Разработка и функциональная характеристика высокоаффинных агентов на основе скаффолдовых распознающих белков для тераностики HER2-положительных опухолей XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 154 (year - 2021)

11. O.A. Kolesnikova, V.O. Shipunova, V.D. Soloviev, S.M. Deyev Получение и характеристика магнитных наночастиц для адресной доставки к HER2–положительным раковым клеткам. Гены и клетки, Том XV, №3, Приложение, 2020 (year - 2020)

12. Shipunova V.O., Deyev S.M. Гибридные наноструктуры для онкотераностики XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 181 (year - 2021)

13. Sogomonyan A.S., Shipunova V.O., Deyev S.M. Фоточувствительные бимодальные полимерные наноструктуры для адресной доставки in vitro и in vivo XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр. 169 (year - 2021)

14. Sogomonyan A.S., Shipunova V.O., Deyev S.M. Биоразлагаемые полимерные наноагенты как средства доставки к HER2-сверхэкспрессирующим раковым клеткам. Гены и клетки, Том XV, №3, Приложение, 2020 (year - 2020)

15. Sogomonyan A.S., Shipunova V.O., Deyev S.M. Адресные противораковые наночастицы полилактид-ко-гликолида, загруженные фотосенсибилизаторами, для детекции и фотоиндуцируемой элиминации HER2- сверхэкспрессирующих опухолей Труды 63-й Всероссийской научной конференции МФТИ, Стр. 75-76 (year - 2020)

16. Soloviev V.D., Shipunova V.O., Zelepukin I.V., Deyev S.M. Механоиндуцируемая клеточная гибель, вызванная низкочастотным высокоградиентным магнитным полем XXXIII ЗИМНЯЯ МЕЖДУНАРОДНАЯ МОЛОДЁЖНАЯ НАУЧНАЯ ШКОЛА "ПЕРСПЕКТИВНЫЕ НАПРАВЛЕНИЯ ФИЗИКО-ХИМИЧЕСКОЙ БИОЛОГИИ И БИОТЕХНОЛОГИИ", Стр.170 (year - 2021)

17. V. Shipunova, I. Zelepukin, M. Belova, P. Kotelnikova, E. Komedсhikova, V. Soloviev, S. Deyev. Small but smart: plasmonic nanostructures for oncotheranostics. V International Symposium on «Physics, Engineering and Technologies for Biomedicine», - (year - 2020)

18. V.O. Shipunova, M.M. Belova, P.A. Kotelnikova, S.M. Deyev Plasmonic silver nanoparticles for theranostics of HER2-positive cancer 2020 International Conference Laser Optics, - (year - 2020)

19. V.O. Shipunova, S.M. Deyev На пути к созданию волшебной пули – многофункциональные наноагенты для тераностики Гены и клетки, Том XV, №3, Приложение, 2020 (year - 2020)

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